How the CIA and Israel Took Down Ali Khamenei on February 28, 2026: The Full Inside Story of Operation Roaring Lion

The man who ran the Islamic Republic for 36 years, who outlasted eight American presidents, survived assassination attempts, economic siege, and two direct military confrontations with Israel, was killed on a Saturday morning while sitting in a building he considered safe. Ali Khamenei, 86, died not because his enemies got lucky. He died because they spent months turning his routines into a targeting blueprint, waited for a single window of operational alignment, and then struck with a precision that left no second chance.

What unfolded on February 28, 2026 was not a reactive strike. It was the product of a multi-month intelligence operation, a decision chain that ran from Langley to Tel Aviv to Mar-a-Lago, and a military execution so compressed in timeline that Iranian state media was still insisting Khamenei was alive hours after his body had already been photographed and shown to Israeli Prime Minister Benjamin Netanyahu.

You need to understand the architecture of this operation to grasp why it succeeded where every prior effort failed.


The Intelligence Foundation: Months of Surveillance

The CIA had been tracking Khamenei for months, gaining more confidence about his locations and his patterns, according to people familiar with the operation. The Irish Times This was not passive surveillance. According to people briefed on the intelligence, the agency built a detailed behavioral profile of the supreme leader, mapping where he slept, whom he met with, how he communicated, and crucially, where he might retreat under threat of direct attack.

They were keeping tabs, too, on Iran’s senior political and military leaders, who rarely gathered in the same place with the ayatollah. CNN That last detail is critical. Khamenei had deliberately structured his security posture around isolation. Senior officials did not cluster around him. Meetings were compartmentalized. The supreme leader’s compound in central Tehran served as his official base, but his precise location within it varied.

What changed in the days leading up to February 28 was a rare convergence. The agency learned that a meeting of top Iranian officials would take place Saturday morning at a leadership compound in the heart of Tehran. Most critically, the CIA learned that the supreme leader would be at the site. The Irish Times

The compound in question was not a hidden location. It housed the offices of the Iranian presidency, the Supreme National Security Council, and Khamenei’s own administrative center, a known address in central Tehran. What was unknown to Iran’s adversaries until the final days was the precise timing, the attendee list, and the floor-plan positioning of the supreme leader himself.

The CIA passed its intelligence, which offered “high fidelity” on Khamenei’s position, to Israel, according to people briefed on the intelligence. The Irish Times The phrase “high fidelity” used by intelligence officials signals more than confidence in the source. It means the data was actionable, granular enough to calibrate munitions, entry angles, and timing down to a two-hour window.


The Political Chain: From Geneva to Mar-a-Lago

The intelligence operation did not exist in a vacuum. The political authorization for what became known as Operation Roaring Lion had been building since late 2025.

During a visit to Mar-a-Lago the week after Christmas, Prime Minister Benjamin Netanyahu informed Trump that Iran was working to advance its ballistic missile program and restart its nuclear capabilities after a US bombing run in June targeted its three main enrichment facilities. CNN Trump, according to accounts from people in that meeting, indicated he would support a renewed Israeli military effort against missile sites. Days later, nationwide protests inside Iran escalated into a crackdown that killed more than 7,000 people, according to the US-based Human Rights Activists News Agency, further hardening the political calculus in Washington.

The final trigger was diplomatic failure. After the final round of talks in Geneva, Switzerland, on Thursday, Witkoff and Kushner called Trump to inform him of Iran’s unmoving position on dismantling its nuclear program entirely, an outcome that seemed to harden the president’s view that military action would be necessary. CNN

Trump reportedly consulted senators Ted Cruz and John Cornyn aboard Air Force One on the Friday before the strike. By then, intelligence officials had already identified the Saturday morning meeting in Tehran that would become the centerpiece of the eventual operation. CNN

Separately, according to The Telegraph and The Washington Post, Mohammed bin Salman, Crown Prince of Saudi Arabia, had conducted multiple phone calls with US President Trump urging him to attack Iran, stating that Iran would become stronger and more dangerous if Washington did not strike immediately. Wikipedia Regional dynamics were pushing in one direction. The decision became a matter of timing, not intent.


The Tactical Pivot: From Night to Day

One of the most telling details about how the operation unfolded is how it changed in the 48 hours before execution. Attack plans for a dark-of-night assault were adjusted to a daytime assault. CNN That is a significant operational shift. Night strikes offer stealth and radar confusion. Switching to a daylight operation means you are accepting greater visibility in exchange for a higher-value target window.

Why did Khamenei feel safer during daylight hours? The overly cautious supreme leader felt less vulnerable during daylight hours, an Israeli source said, and let down his guard. CNN After decades in power, Khamenei had developed his own threat model. Night was when covert operations happened. Day was when leadership convened. That assumption became the operating exploit.

The operation began at about 6am in Israel, as fighter jets took off from their bases. The strike required relatively few aircraft, but they were armed with long-range and highly accurate munitions. The Irish Times

Israeli Air Force Chief of Staff Eyal Zamir sent a message to his pilots as they took off that morning. In a note to Israeli air force pilots, he wrote: “On Saturday at dawn, Operation Roaring Lion begins. You are cleared to strike your targets. We’re making history. I trust you. Good luck to us all.” CNN

Two hours and five minutes after the jets took off, at about 9:40am in Tehran, the long-range missiles struck the compound. Senior Iranian national security officials were in one building at the compound. Khamenei was in another nearby building. The Irish Times

That spatial detail matters. Khamenei was not in the same room as his generals. He was in an adjacent structure. The strike simultaneously engaged both. The Wall Street Journal reported that 30 bombs were dropped on the compound where Khamenei was meeting with senior leadership. The Times of Israel


The Targets Killed Alongside Khamenei

The operation was not solely aimed at the supreme leader. It targeted the functional leadership of the Islamic Republic’s military and security apparatus in a single, simultaneous decapitation strike.

Israeli intelligence had determined that the gathering would include top Iranian defense officials, among them Mohammad Pakpour, commander in chief of the Islamic Revolutionary Guard Corps; Aziz Nasirzadeh, defense minister; Admiral Ali Shamkhani, head of the Military Council; Seyyed Majid Mousavi, commander of the IRGC Aerospace Force; and Mohammad Shirazi, deputy intelligence minister. Caliber.Az

Khamenei was killed along with around 40 senior Iranian officials, the IDF said. ABC News Iranian state media subsequently confirmed the deaths of Shamkhani and Pakpour, two of the most operationally critical figures in Iran’s military structure.

The strategic logic behind targeting the entire command layer simultaneously was explicit. Israel says its opening strikes decimated the chain of command, killing seven senior defense and intelligence officials and targeting 30 top military and civilian leaders overall. Axios This was not a targeted assassination followed by conventional military operations. It was a command-and-control obliteration designed to leave the Iranian security state without leadership at the precise moment it needed to coordinate a response.

The IDF confirmed this intent directly, describing the strike as a precise, large-scale operation carried out by the Israeli Air Force, guided by accurate IDF intelligence. The Times of Israel


The Role of Artificial Intelligence

One element of this operation that deserves specific scrutiny is the reported use of AI in mission planning. Israel and the United States used an artificial intelligence system and detailed CIA intelligence to help plan and time their joint strike on Iranian leadership in Tehran, according to reports in the Wall Street Journal and the New York Times. i24NEWS

The Wall Street Journal reported that the attack was carried out with the assistance of Claude, an artificial intelligence tool developed by the company Anthropic. According to reports, sources familiar with the matter said military headquarters around the world, including United States Central Command in the Middle East, are using Claude for intelligence assessments, target identification, and battle scenario simulations. i24NEWS

CENTCOM declined to comment on specific systems. The broader implication, though, is worth noting. If AI tools are being used for target identification and battle scenario modeling in an operation of this visibility and consequence, the integration of machine intelligence into lethal military decision chains has reached a threshold that policymakers have not yet formally acknowledged, let alone regulated.


The Confirmation Battle: Disinformation and Reality

Even as the missiles struck their targets, the information war that followed demonstrated exactly how Iran’s regime intended to manage the crisis in its final hours. These reports around Khamenei’s death were initially disputed by Iranian sources, with Iran’s Ministry of Foreign Affairs spokesman Esmail Baghaei stating that Khamenei was safe and sound, and Reuters reporting that Khamenei was transferred to a secure location outside of Tehran. Wikipedia

Iranian news agencies Tasnim and Mehr issued statements that Khamenei was alive and still commanding. For several hours, the informational landscape was contested. Then the physical evidence became unavoidable. An unnamed Israeli official said that Khamenei’s body was located following the strikes, a photograph of which was reportedly shown to Israeli prime minister Benjamin Netanyahu. Wikipedia

Trump posted on Truth Social within hours of the strike, calling Khamenei one of the most evil people in history and stating that he had been unable to avoid US intelligence and highly sophisticated tracking systems.

On 1 March, the Iranian government confirmed Khamenei’s death and announced 40 days of public mourning. Wikipedia Iranian state television broadcast archive images behind a black banner. A broadcaster broke down in tears on air, confirming that Khamenei had reached martyrdom. The regime’s information strategy had collapsed alongside its command structure.


How Iran Failed Its Own Security Protocol

Understanding what went wrong for Khamenei is as important as understanding what went right for Washington and Tel Aviv. The Islamic Republic had, for decades, operated on the assumption that dispersal and unpredictability would protect its leadership. The lesson from the killing of Qassem Soleimani in January 2020 should have been clear: precise intelligence, combined with long-range precision weapons, can reach any target that moves through identifiable patterns.

The operation also showed the failure of Iran’s leaders to take adequate precautions to avoid exposing themselves at a time where both Israel and the US sent clear signals that they were preparing for war. The Irish Times

During the June 2025 Twelve-Day War, US and Israeli intelligence gained significant new insight into how the supreme leader and the Revolutionary Guard communicated and moved under pressure. During that 12-day war, the US learned even more about how the supreme leader and the Revolutionary Guards communicated and moved while under pressure, the former official said. The Irish Times Far from learning the right security lessons from that conflict, Iranian leadership appears to have maintained patterns of behavior that the CIA continued to map with increasing accuracy.

The Saturday morning meeting that killed Khamenei was, by the account of Israeli officials, not a clandestine gathering. Israeli officials stated that before the assassination, Khamenei was above ground at his non-secretive official residence. Wikipedia He was at his office. He was attending a scheduled meeting. He had, in the assessment of those who watched him for months, let his guard down during daylight hours at a location he considered institutionally protected.


The Succession Crisis and What Comes Next

Khamenei left behind no designated successor. As the position of Supreme Leader is appointed by the Assembly of Experts and the position of Vice Supreme Leader was abolished in 1989, Khamenei had no officially appointed successor. Wikipedia

Per Iran’s constitution, a three-person temporary leadership council has been formed to lead Iran through its transition to the next supreme leader. The council is made up of Pezeshkian, Ayatollah Alireza Arafi, and Gholamhossein Mohseni Ejei, the head of Iran’s judiciary. ABC News The 88-member Assembly of Experts must now choose a permanent replacement. That process has never happened under wartime conditions.

The death of Khamenei ushers in only the second leadership transition since the 1979 Islamic Revolution, described by the Council on Foreign Relations as historically significant but deeply uncertain in its outcome. CNBC

The CFR’s analysis was unambiguous about the limits of what this moment can achieve on its own: taking out Iranian Supreme Leader Ayatollah Ali Khamenei is not the same as regime change. The Islamic Revolutionary Guard Corps is the regime. CNBC The IRGC remains intact, motivated, and is pressing for the swift appointment of a permanent leader aligned with its institutional interests.

Leadership change in Iran could take three primary trajectories: regime continuity, military takeover, or regime collapse, the CFR reported. The think tank warned that none of these near-term scenarios envisage a positive transformation in the year or so after transition. CNBC

One surviving senior official, Ali Larijani, longtime parliamentary speaker and secretary of Iran’s Supreme National Security Council, has emerged as a key figure. Larijani, who had been a key adviser to Khamenei, said a temporary leadership structure comprising of the president and the head of the judiciary would soon be in place. Axios He also signaled that Iran would continue targeted strikes against American bases in the region, making clear that the regime, diminished as it is, does not consider itself defeated.


The Operational Legacy

Step back from the immediate geopolitics and what you have is a case study in how intelligence-driven targeting, patient surveillance, political alignment, and precision munitions can converge to achieve in 125 minutes what decades of sanctions, proxies, and deterrence could not.

The CIA’s months-long tracking of Khamenei’s patterns, the high-fidelity intelligence passed to Israel, the decision to shift a night operation to a daylight strike to exploit a scheduling window, the targeting of the entire Iranian national security leadership simultaneously, and the use of long-range munitions that gave Iranian air defense no intercept opportunity, all of these elements were necessary. None alone was sufficient.

Senator Tom Cotton, chairman of the Senate Intelligence Committee, stated that the operation was driven by intelligence collected by Israel and the United States that has once again proven that our nations have capabilities that no other nation on Earth has. CBS News

What Cotton did not say, and what the operation forces you to confront directly, is whether removing a supreme leader during an active war accelerates resolution or deepens chaos. Iran’s retaliatory strikes across the Gulf, including reported attacks near Abu Dhabi and US military installations, confirm that the regime retains the operational capacity to project force even without its leadership apex.

The man who built the Islamic Republic’s deterrence architecture across 36 years, who cultivated Hezbollah, funded Hamas, advanced ballistic missiles, and brought Iran to the threshold of nuclear capability, is dead. The architecture he built is not. That is the strategic tension that will define the months ahead, and it is the question no targeting package, regardless of its fidelity, can answer.


References

Assassination of Ali Khamenei, Wikipedia https://en.wikipedia.org/wiki/Assassination_of_Ali_Khamenei

CIA intelligence led to strike that killed Khamenei in Iran, CBS News https://www.cbsnews.com/news/cia-intelligence-us-israel-strike-ayatollah-ali-khamenei-iran/

How CIA intel led to the assassination of Iran’s supreme leader Ayatollah Ali Khamenei, IOL https://iol.co.za/news/world/2026-03-01-how-cia-intel-led-to-the-assassination-of-irans-supreme-leader-ayatollah-ali-khamenei/

CIA closely watched Khamenei for months before fatal strikes in Iran, CNN https://edition.cnn.com/2026/03/01/politics/cia-ayatollah-ali-khamenei-strike

What we know about the death of Iranian supreme leader Khamenei, CNN https://edition.cnn.com/2026/02/28/middleeast/ayatollah-khamenei-iran-killed-airstrike-intl-latam

Iran after Khamenei: What’s next and what it means for the country, CNBC https://www.cnbc.com/2026/03/01/iran-khamenei-dead-us-israel-strike-trump-netanyahu.html

Iranian state media confirms Supreme Leader Khamenei is dead, Axios https://www.axios.com/2026/02/28/iran-khamenei-killed-israel

Iran confirms Supreme Leader Ali Khamenei dead after US-Israeli attacks, Al Jazeera https://www.aljazeera.com/news/2026/2/28/irans-supreme-leader-ali-khamenei-killed-in-us-israeli-attacks-reports

Iran’s Ayatollah Ali Khamenei is killed in Israeli strike, NPR https://www.npr.org/2026/02/28/1123499337/iran-israel-ayatollah-ali-khamenei-killed

CIA intel on Khamenei’s location helped Israel time the strike, i24NEWS https://www.i24news.tv/en/news/middle-east/iran-eastern-states/artc-cia-intel-on-khamenei-s-location-helped-israel-time-the-strike-report

IDF says dozens of top Iranians killed within seconds of Khamenei as CIA role emerges, Times of Israel https://www.timesofisrael.com/idf-says-dozens-of-top-iranians-killed-within-seconds-of-khamenei-as-cia-role-emerges/

How the CIA tracked Khamenei: the death of Iran’s supreme leader, Irish Times https://www.irishtimes.com/world/us/2026/03/01/death-of-ayatollah-ali-khamenei-us-tracked-irans-supreme-leader-israel-struck/

Intelligence pinpointed Khamenei in Tehran compound ahead of precise strike, ABC News https://abcnews.com/International/intelligence-pinpointed-khamenei-tehran-compound-ahead-precise-strike/story?id=130649278

Ayatollah Ali Khamenei, Iran’s supreme leader, is dead at 86, The Washington Post https://www.washingtonpost.com/obituaries/2026/02/28/ayatollah-khamenei-dead-iran/

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